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Physician payroll: clinic staff, locums, and family on the MPC done right

An MPC payroll is really three separate problems. Clinic staff are ordinary employees who need clean pay runs and remittances; locums are self-employed and belong outside payroll entirely; family members can be paid defensibly — but almost always by salary for real work, because TOSI closes most dividend routes in a professional corporation. We set up all three so year-end holds no surprises.

By the AnalytIQ Accounting team · Last reviewed: September 12, 2026

Physician consulting with a patient at a medical clinic

At a glance · physicians

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GST/HSTMostly exemptOHIP billings are exempt; HST paid on rent and EMR software is not recoverable.
StructureMedicine PCCPSO Certificate of Authorization; voting shares stay with the physician.
Key deadlineT2 six months after year-endBalance owing is due three months after year-end when the small business deduction applies.
Watch forPassive income grindInvestment income above $50,000 inside the MPC shrinks the low-rate limit.

Clinic staff: a small payroll with no room for improvisation

Most MPCs employ two to five people — a receptionist, a nurse or clinical assistant, sometimes a part-time billing clerk — and small payrolls fail on process, not complexity. The fixed sequence: an RP payroll account under the MPC's business number, a cloud platform such as Wagepoint or QuickBooks Online Payroll to withhold CPP, EI, and income tax, remittances to CRA by the 15th of the month after payday (quarterly once you qualify as a small remitter), T4s by the last day of February, and an ROE within days of any interruption in employment.

Cost-sharing clinics add the wrinkle worth settling up front: every staff member needs exactly one employer of record. If the group shares a receptionist, one physician runs that payroll and recharges the others their portion — the recharges are expense recoveries between physicians, not wages, and they must never generate a second set of slips.

Locum payments are fees, not wages

A locum physician is almost always self-employed, so nothing about a locum belongs in your payroll module. The mechanics depend on the arrangement. Where the locum bills OHIP under their own billing number and pays you an overhead percentage, your books show overhead income and no payment to the locum at all. Where you collect and split, the locum's share is a fee for services: a T4A with box 048 if you pay them personally, an ordinary invoice if they bill through their own MPC.

Watch the drift. A locum who has covered the same three days a week for eighteen months, on your schedule, your staff, and your equipment, starts to resemble an employee under CRA's control-and-risk tests — and reclassification means retroactive CPP and EI for both shares. US-trained locums, and your own US telehealth moonlighting, raise residency and treaty questions we take up in our physician cross-border guide.

Family on the MPC payroll, done right

Salary for real work is the reliable way to move practice income to a spouse or adult child; dividends usually are not. Ontario lets family members hold non-voting MPC shares, but TOSI taxes their dividends at the top marginal rate unless an exception applies — and the excluded-shares exception is expressly unavailable to professional corporations, leaving the excluded-business test, which wants roughly 20 hours a week of genuine involvement this year or in any five earlier years.

Wages face a different, friendlier test: reasonableness. Pay your spouse what you would pay a stranger for the same billing-reconciliation, scheduling, or bookkeeping work, run it through payroll with withholding and a T4, and keep the evidence. The contrast in practice:

Defensible family payrollWhat gets flagged on audit
Market-rate wage tied to a written job descriptionRound-number salary reverse-engineered from a tax bracket
Timesheets or a duties log kept through the yearNo record of hours, duties, or output
Paid through payroll with withholding and a year-end T4Lump-sum e-transfers recharacterized as wages at year-end
Deposited to an account the family member controlsMoney circling straight back to the physician
Dividends only where a TOSI exception clearly appliesDividends to a spouse with no role in the practice

Your own pay: salary, dividends, and what the calendar demands

Salary from the MPC is deductible, creates RRSP room, and builds CPP — with the CPP2 second earnings ceiling adding an employer-side band — at the cost of running yourself through the same remittance cycle as your staff. Dividends skip all of that and arrive on a T5, but build no RRSP room and no CPP. Physicians have no employer pension waiting elsewhere, which makes the RRSP room worth more than most owners assume.

There is no standing answer. The blend depends on cash needs, retained-earnings goals, and whether a vehicle like an individual pension plan enters the picture later. We model the split annually as part of advisory work, then set payroll to match — the plan drives the pay runs, never the reverse.

Source: CRA — Income sprinkling (tax on split income).

What we take off your plate

Payroll for physicians, handled.

  • Clinic staff on clean T4 payroll, locums paid as fees not wages
  • Family pay set on salary with real duties, defensible under TOSI
  • Wagepoint or QuickBooks Payroll set up and run on schedule
  • CRA source deductions remitted by the 15th
  • T4s, T4As and ROEs filed without a February scramble
  • WSIB and Ontario EHT tracked alongside payroll

Mistakes we fix

Three things that go wrong for physicians.

  1. Booking the monthly OHIP deposit instead of gross billings, which hides rejected and stale-dated claims
  2. Paying a spouse dividends from the MPC with no defensible role in the practice, failing the TOSI test
  3. Charging no HST on medico-legal and third-party report fees, which are fully taxable

Recognise one? Book a call and we will tell you what it is costing you.

Services for physicians

Six services, one team that knows how physicians run.

Start with one. Add the rest when it makes sense; the books, payroll and tax already talk to each other.

Free proposal

A fixed fee for your payroll, in writing.

  1. Tell us about your business. The form takes about a minute.
  2. A short discovery call. Fifteen minutes to confirm what you need.
  3. A fixed fee in writing. We reply within one business day. No hourly surprises.
  • Canadian and US filings under one roof
  • Cloud-first: QuickBooks Online, Dext, Wagepoint
  • Brampton, Ontario, with clients across Canada and the US

Related answers

Browse all 200 answers.

Common questions.

Do I issue a T4A to a locum physician?

Yes if you pay a self-employed locum a share of billings personally — box 048 fees for services. A locum billing through their own medicine professional corporation sends invoices, and no slip applies.

Can I pay my spouse a salary from my MPC?

Yes, for genuine work at the rate you would pay a stranger, documented and run through payroll with a T4. Salary is tested for reasonableness rather than TOSI, which is what makes it the dependable channel.

Are dividends to family from the MPC still worth paying?

Usually only where a TOSI exception clearly applies, such as the excluded-business test of roughly 20 hours a week of real involvement. The excluded-shares exception is not available to professional corporations.

Related reading

Clinic payroll without year-end surprises.

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